PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P30800_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

YABBY

Protein Properties

Length: 163aa MW: 18432 Da PI: 9.8336

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P30800_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	172.8	2.2e-53	2	153	6	169
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 s++qvCyv+C+fCntil+v++P + lf vtv+C C+++lsvn + q l+ ++ +++ ++++ + + +++++a GSMUA_Achr3P30800_001 2 STQQVCYVHCSFCNTILVVNIPCNNLFDNVTVQCENCANMLSVNFGAQFQRLPLQDV--------QHHSIGSQGLHRDCGSSSSKCAG 81 689************************************************9996........33334444444444444444444 PP YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++ + +++ ++++ rv kr+rvPs ynrfikeei+r+ka nPdishreafs+aaknWah+P+ihfg GSMUA_Achr3P30800_001 82 IDTMN--STKSIKQQMLRVRT--AAAGKRRRVPSVYNRFIKEEIRRLKARNPDISHREAFSTAAKNWAHLPRIHFG 153 33333..34667788888766..4578**********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.2E-60	2	153	IPR006780	YABBY protein
SuperFamily	SSF47095	1.83E-7	97	148	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	105	148	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MSTQQVCYVH CSFCNTILVV NIPCNNLFDN VTVQCENCAN MLSVNFGAQF QRLPLQDVQH 60 HSIGSQGLHR DCGSSSSKCA GIDTMNSTKS IKQQMLRVRT AAAGKRRRVP SVYNRFIKEE 120 IRRLKARNPD ISHREAFSTA AKNWAHLPRI HFGQSVEGNQ QLW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	108	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FM878687	0.0	FM878687.1 Musa acuminata subsp. burmannicoides var. calcutta 4 mRNA containing microsatellite, clone MAC4-67N21-F.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018679521.1	1e-120	PREDICTED: axial regulator YABBY 5-like isoform X3
Swissprot	Q8GW46	3e-53	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	M0SJ94	1e-119	M0SJ94_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P30800_001	1e-120	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-55	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]