PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P31070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 211aa    MW: 22170.3 Da    PI: 8.2577
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P31070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.82e-20101135135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  GSMUA_Achr3P31070_001 101 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 135
                            ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-1895146IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-1498142No hitNo description
PROSITE profilePS5011413.96998131IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-1799136IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.85E-13100132No hitNo description
PfamPF003204.4E-18101135IPR000679Zinc finger, GATA-type
PROSITE patternPS003440101126IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MLHRCGHQSS SYPCSCGSAY FSVVFPVTGK QSTDEDHDVA RSGCSSPSSV DCTLSLGTPS  60
TRQTENKAAA AASSTISNAF YGGATNGSNF GGDPLLLARR CANCDTTSTP LWRNGPRGPK  120
SLCNACGIRY KKEERRTAAS MAPPSSSSPV TSAAGEKQLR SPWSCYDSSA TKGNSSIAMY  180
DDDTAGHGEA SYLAPSPQFS ARNRPSLSQY H
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394239.11e-135PREDICTED: GATA transcription factor 18-like
SwissprotQ9ZPX02e-32GAT20_ARATH; GATA transcription factor 20
TrEMBLM0SJC11e-153M0SJC1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P31070_0011e-153(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.13e-32GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]