PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P31370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 261aa    MW: 29310.5 Da    PI: 7.4729
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P31370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.41.7e-3634130289
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssasec....eaesssssas 83 
                            +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+q+ak+ai +l+++     +a ec    e+ ++  s++
  GSMUA_Achr3P31370_001  34 TGRKDRHSKVYTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIQNAKAAIEQLAELprHHAPAYECievnEQPMQAASDG 121
                            79**************************************************************554444477854332223333333 PP

                    TCP  84 nsssg...k 89 
                            ++s++   +
  GSMUA_Achr3P31370_001 122 HNSIEqslS 130
                            333333330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.2E-3334120IPR005333Transcription factor, TCP
PROSITE profilePS5136932.3133694IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEESNRRHYN RRRWRPELAG EIVEVPGGHI VRSTGRKDRH SKVYTAKGLR DRRVRLSAHT  60
AIQFYDVQDR LGYDRPSKAV DWLIQNAKAA IEQLAELPRH HAPAYECIEV NEQPMQAASD  120
GHNSIEQSLS DAKTTMVWWN AGNTSAGSGG EFMHSAALPP QSAVLHLVNS QFQICTQREP  180
LQSSNFPSFR AWRNPTALHP SLVSTVADAF VSESYGGFSG FHIPTRIQGE EQHNGIATIH  240
SASPQEYKLR ERDDANATLD F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-214194154Putative transcription factor PCF6
5zkt_B1e-214194154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394201.16e-88PREDICTED: transcription factor PCF5-like
TrEMBLM0SJF10.0M0SJF1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P31370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.39e-43TCP family protein