PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P31390_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 223aa MW: 24810.7 Da PI: 9.075

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P31390_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.2	8.4e-09	110	175	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH.........HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee.........kvkeLeaeNkaLkkeleelkkevaklks 61 kr +r NR +A+rsR RK+++i eLe+ +v+ L+ +++ L +++lk+ +a+l + GSMUA_Achr3P31390_001 110 KRVKRILANRQSAQRSRVRKLQYISELERstevsalspRVAFLDHQRSLLTMGNSHLKQRIAALAQ 175 8999***********************984544444445666667777777777777777766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-7	106	165	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.0E-12	110	170	No hit	No description
Pfam	PF00170	5.9E-7	110	146	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.7E-8	110	167	No hit	No description
CDD	cd14703	3.42E-16	111	156	No hit	No description
PROSITE pattern	PS00036	0	113	128	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MSNNWPYFAH HPAPAAALAP HHFFPAHPPA WADEFLDFSA TRRNHHRRSA SDSMPAPPSS 60 SSDQDSMNED KPAAAGQMEA QSMCKTEPEA ASGPTAAQAG AESESVVDPK RVKRILANRQ 120 SAQRSRVRKL QYISELERST EVSALSPRVA FLDHQRSLLT MGNSHLKQRI AALAQDKIFK 180 DAHREALKKE IERLRRIYDQ QNLDKLAASD AEPAARTEKE LLS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009394198.1	1e-131	PREDICTED: basic leucine zipper 6-like isoform X1
Swissprot	Q5JMK6	7e-61	BZP06_ORYSJ; Basic leucine zipper 6
TrEMBL	M0SJF3	1e-161	M0SJF3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P31390_001	1e-162	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1322	38	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	9e-55	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]