PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P31720_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 309aa    MW: 33011.6 Da    PI: 5.0779
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P31720_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.8e-18203237135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C +C+t kTp+WR gp g+ktLCnaCG++y++ +l
  GSMUA_Achr3P31720_001 203 CLHCQTDKTPQWRTGPMGPKTLCNACGVRYKSGRL 237
                            99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-7616285IPR016679Transcription factor, GATA, plant
SMARTSM004012.2E-17197247IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.229197233IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.3E-15199234IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.95E-15199260No hitNo description
CDDcd002024.66E-15202249No hitNo description
PROSITE patternPS003440203228IPR000679Zinc finger, GATA-type
PfamPF003206.2E-16203237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEAPQYFHGG FYRDGNPQCA PERKAGGGGE QFSVEDLLDF SNEEEDEAGG LAATGEDGAA  60
GNSTDSSTVT AVDSCGNSFS ALEPHFSSDL VCRSLADASL SGDLCEPYDE LAELEWLSNF  120
VEESFSSEDL HKLHLISGVA PFRAEALVPG KARSKRSRAA PCSWSSRLLV LSPSLTAAPS  180
PESELIDMSA GPAVAAAPDG RKCLHCQTDK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE  240
YRPAASPTFV VSKHSNSHRK VLELRRQKEL QQQHLHAGGG ASLYNGPTPV DAAAADDFLI  300
HGPDFRHLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394172.10.0PREDICTED: GATA transcription factor 9-like isoform X2
SwissprotO826321e-76GATA9_ARATH; GATA transcription factor 9
TrEMBLM0SJI60.0M0SJI6_MUSAM; GATA transcription factor
STRINGGSMUA_Achr3P31720_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.17e-68GATA transcription factor 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]