PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P32510_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 423aa    MW: 47959.6 Da    PI: 9.1719
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P32510_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-16169220155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  GSMUA_Achr3P32510_001 169 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 220
                            89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.05970140IPR001471AP2/ERF domain
PRINTSPR003673.2E-57182IPR001471AP2/ERF domain
PfamPF008475.4E-12169220IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18169230IPR016177DNA-binding domain
CDDcd000184.20E-25169230No hitNo description
PROSITE profilePS5103218.953170228IPR001471AP2/ERF domain
SMARTSM003802.7E-26170234IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18170229IPR001471AP2/ERF domain
PRINTSPR003673.2E-5210230IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MDVIPVKSET NGTGRRLHGA AVLVPSNGNQ VVKVIKRRKR EPTLPQIGSD ANREMIDQSS  60
TCSTMKRSSR FRGVSRHRWT GRFEAHLWDK GSWNATQRKK GKQGTLFQIL LTISFCLFFN  120
FIFYWGPSTY TNFQVSDYDK EIQVMQSVTK EEYLASIRRK SSGFSRGVSK YRGVARHHHN  180
GRWEARIGRV FGNKYLYLGT YSTQEEAARA YDIAAIEYRG INAVTNFDLS TYIRWLKPGA  240
SSNVRNTTGE QHANIDEFCA LQIPNNHFST GQAEEHLNFN PFITEYMNLQ YKQEYTADQF  300
PGGGGAAAAV TGCTGASSKS SPTALSLLLK SSIFRQLVDN FSAVNEEFEG DGTKERKRLQ  360
GEHDQSNGIF YEEMAGAPYV RDPNDEHGQR IELLRETVCC YEHSEQQTHW NGIMSISSMQ  420
QLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018678832.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
TrEMBLM0SJR50.0M0SJR5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P32510_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-75AP2 family protein