PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P02200_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 233aa    MW: 26022.4 Da    PI: 4.9424
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P02200_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-19654254
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                           +y+GVr+++ +g+Wv+eIr+p     +  +r++lg+f tae+Aa+a+++a++ + 
  GSMUA_Achr4P02200_001  6 RYRGVRQRH-WGSWVSEIRHP-----TlkTRIWLGTFETAEDAARAYDEAARLMC 54
                           69******9.**********9.....445**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.39E-34563No hitNo description
SuperFamilySSF541715.1E-21664IPR016177DNA-binding domain
SMARTSM003805.9E-41669IPR001471AP2/ERF domain
PROSITE profilePS5103221.14663IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-34663IPR001471AP2/ERF domain
PfamPF008479.6E-12655IPR001471AP2/ERF domain
PRINTSPR003674.2E-11718IPR001471AP2/ERF domain
PRINTSPR003674.2E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MPKLQRYRGV RQRHWGSWVS EIRHPTLKTR IWLGTFETAE DAARAYDEAA RLMCGPTART  60
NFPFDPNFSS VLSPNLMAKL ERCCSASGDE SRRGKATPIG SQEDVAQCTD EEYIEEMIQE  120
LTYSGSLEIS TSSSSSSSSS CYLEVLWSHL VAISVSARAV LFGGEGLNMQ PMTDTFALET  180
CQCALCSSWY VVPFTILLKM DPGWLYLVAV EKKAYSNEDL DAQHPSWLPP MHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17367267ATERF1
3gcc_A2e-17367267ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083552e-31AK108355.1 Oryza sativa Japonica Group cDNA clone:002-142-C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394886.11e-101PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW54e-43ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLM0SKD71e-173M0SKD7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P02200_0011e-174(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.18e-33ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]