PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P02660_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C3H

Protein Properties

Length: 242aa MW: 26960.3 Da PI: 7.2108

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P02660_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.8	1.4e-06	111	133	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f+r+G C+ Gd C aHg GSMUA_Achr4P02660_001 111 SPCPDFRRGGGCRLGDACDLAHG 133 79****************88887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	6.033	64	96	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.498	107	135	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.018	107	134	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.5E-5	111	135	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-4	111	133	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.099	143	167	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	13	143	166	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MAPGERALRH PMGHAPPWPV TEHPMAEMQQ NDTLPVSDVV GLSAMQHFLL GSSADLDLAA 60 DEYACDEFRM YEFKVRRCPR GRVHDWTECP YAHSGEKARR RDPRRFQYSG SPCPDFRRGG 120 GCRLGDACDL AHGVFETWLH PARYRTQPCK DGTACSRRVC FFAHTPEQLR ILGKVRSALP 180 FGTRSGFASP ASLESDPATR GRRAAAAVAD QSAPRLLEDW GRQEEAAEPA PDLAWVSELV 240 KD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009395218.1	1e-160	PREDICTED: zinc finger CCCH domain-containing protein 20-like
Swissprot	Q6L4N4	2e-64	C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBL	M0SKI3	1e-177	M0SKI3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P02660_001	1e-178	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25900.2	4e-58	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]