PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P03460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 534aa    MW: 56728.6 Da    PI: 6.6513
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P03460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS220.96.5e-681625333374
                   GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            + L+++A++v+s+d++ a+ +L+rl+++  s + ++++R+ + f+eAL a l        ++ +p  +   + ++++aa+k+f ++sP
  GSMUA_Achr4P03460_001 162 DSLIRAAHCVESRDFATAHVILSRLNHHiPSAAVSSFHRALSLFKEALLALLRP------STAEPPLS-AAELVRHIAAHKAFADLSP 242
                            579*************************566666******************99......33333333.3569*************** PP

                   GRAS  90 ilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeel 172
                            ++ f+ +t  q++ ea++g  + +H iDfd++ G++W ++ q+La+R     ++pp +RiT+v++   +++ e+   +e+L++fA++l
  GSMUA_Achr4P03460_001 243 VPHFGTFTVTQTLIEALDGGtRSIHLIDFDLGLGGHWSSFAQELAARCrasrSSPPAVRITAVVA---EESGETALAAENLRDFARSL 327
                            ******************987999*********************998778788***********...468889999*********** PP

                   GRAS 173 gvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse....... 251
                             ++f  n++    l +l l+ +r+   gE +aV l  +++r+l ++++ es + ++L+++++ sP+vv +v+ e    +s+       
  GSMUA_Achr4P03460_001 328 SISFAVNFVRIGGLGTLALSGIRLAGaGEPTAVVLTPSVFRILGRDAAPES-TASLLRFIRRASPRVVLFVDAEGGSaGSAvgphpap 414
                            ********9999************999****************99999999.**********************88845558899998 PP

                   GRAS 252 sFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                            s+ + ++  +e+++a+++s+ea+++++    e+ + +Er+++++ +v  v     +      + + Wre +  aG + +p+se++++q
  GSMUA_Achr4P03460_001 415 SLRRTVAAGVEHFAAVLESVEATAAATGageEAVRRIERAVVRPLVVGTVGG---W----AGRPGPWREVFAGAGWSRAPFSESTESQ 495
                            9*******************99977766565777788999888887777654...3....35689*********************** PP

                   GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            a+ l+ + +++gyrv   +g+lvl W++r+L s+SaWr
  GSMUA_Achr4P03460_001 496 AEWLVLRAPVEGYRVSRMDGALVLSWRGRELSSTSAWR 533
                            *************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.435134513IPR005202Transcription factor GRAS
PfamPF035142.3E-65162533IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MKHSKPLTDP PQQQQQPAAH RHFALVSKPL LDSSTHPDTN NNAFAPSLFY EPTSVLDAHL  60
SSSPATAPAP AGAGDLPLLS WAGGGGGGSD AHYQHHHHLP TSDDWDSASW FLSERYDLSP  120
FPDDTNHPFL DSSFDVHFDP FAATAADPIP SPAPSFDRSQ LDSLIRAAHC VESRDFATAH  180
VILSRLNHHI PSAAVSSFHR ALSLFKEALL ALLRPSTAEP PLSAAELVRH IAAHKAFADL  240
SPVPHFGTFT VTQTLIEALD GGTRSIHLID FDLGLGGHWS SFAQELAARC RASRSSPPAV  300
RITAVVAEES GETALAAENL RDFARSLSIS FAVNFVRIGG LGTLALSGIR LAGAGEPTAV  360
VLTPSVFRIL GRDAAPESTA SLLRFIRRAS PRVVLFVDAE GGSAGSAVGP HPAPSLRRTV  420
AAGVEHFAAV LESVEATAAA TGAGEEAVRR IERAVVRPLV VGTVGGWAGR PGPWREVFAG  480
AGWSRAPFSE STESQAEWLV LRAPVEGYRV SRMDGALVLS WRGRELSSTS AWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-1622853293378Protein SCARECROW
5b3h_A2e-1622853292377Protein SCARECROW
5b3h_D2e-1622853292377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394750.10.0PREDICTED: scarecrow-like protein 15 isoform X1
TrEMBLM0SKR30.0M0SKR3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P03460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17202711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.12e-52GRAS family protein