PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P04310_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 473aa    MW: 50698 Da    PI: 9.0063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P04310_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-052749123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           + C+ C+k F r  nL+ H r H
  GSMUA_Achr4P04310_001 27 FICEVCNKGFQREQNLQLHRRGH 49
                           89*******************88 PP
2zf-C2H215.26.4e-05103125123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k++  +s+Lk H + +
  GSMUA_Achr4P04310_001 103 WKCDKCSKRYAVPSDLKAHSKIC 125
                            58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.1E-62649IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-72649No hitNo description
SMARTSM003550.00522749IPR015880Zinc finger, C2H2-like
PfamPF121712.2E-52749IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.992749IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
SMARTSM00355796898IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-691124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-798123No hitNo description
SMARTSM0035568103123IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEAASFSDAE AVVIALSPKS LLATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLKQKNP  60
KEVCRKVYIC PETTCVHHDP SRALGDLTGI KKHYSRKHGE KKWKCDKCSK RYAVPSDLKA  120
HSKICGTREY RCDCGTLFSR RDSFITHRAF CDALAQEGGR IPTAMNTIGS YLYGNAGTNL  180
GLPQLNAQLS LEDRAHVVPP DPLRLAGNGG ATRFNHLTVP ALQPIHPSRS APFYLGGGSS  240
RDLGDDPLLL QSKPFNGLMQ LQQLHSSAAT ATDLFNLGIL SDSSNRSIAI KPNAHPLISD  300
RLNSTAGGSN EPPTLFAGNL LSNHVHPNMS SSTYDQSVKS DSAPPHMSAT ALLQKAAQMG  360
VTPNRGSGSS LLKGLGSSYS SGKYTSFGAG FDGAEGSSAA AQLQDVMNSL ANGNHMCSST  420
NESELQQNQS GSGMGAPDSL TRDFLGVGGM MRSMGGGMTQ REQHLSGSYG SLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-3299166370Zinc finger protein JACKDAW
5b3h_F2e-3299166370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395294.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic
RefseqXP_009395295.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-111IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLM0SKZ80.0M0SKZ8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P04310_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-107indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]