PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P04990_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family DBB
Protein Properties Length: 383aa    MW: 42590.6 Da    PI: 7.463
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P04990_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.86.9e-06143181537
               zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                             C+ +++ke+  fC  ++  lC+ C    H        H
  GSMUA_Achr4P04990_001 143 LCDVCGKKEALVFCCADEAALCDACDRRVHCAnklsgkH 181
                            7*************************9999544555555 PP
2zf-B_box322.5e-10193229237
               zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.H 37 
                            +++ C+ ++ek+++lfC++++  lC++C +++H+  H
  GSMUA_Achr4P04990_001 193 SNPLCDVCQEKRAILFCQEDRAILCRECDSAIHSTnH 229
                            6899*****************************6565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.57139186IPR000315B-box-type zinc finger
SMARTSM003362.5E-11139186IPR000315B-box-type zinc finger
CDDcd000211.42E-6142186No hitNo description
PROSITE profilePS5011910.637192239IPR000315B-box-type zinc finger
SMARTSM003361.2E-14192239IPR000315B-box-type zinc finger
PfamPF006435.1E-8194229IPR000315B-box-type zinc finger
CDDcd000211.36E-8195239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MRSFYVTPCD AYIAFIHVGM YIKIPMSAML PYHGASPTCV RRAISYRDDK ASLQWKRGFL  60
GWPPSYVSIN SWEPSSCRLS LSLSLLFQLI FYNRSPTTLD LFLHHQSLIS LHASIDQRLK  120
KTFRRGGREA EEWKSGGCVM KILCDVCGKK EALVFCCADE AALCDACDRR VHCANKLSGK  180
HRRFSLDYPS VHSNPLCDVC QEKRAILFCQ EDRAILCREC DSAIHSTNHL TMKHSRFLLT  240
GVRFSAAPLS APDTEAAAAA NSRDASASFS ATSSGNASSI SEYLTKTCPG WHVEDLLVED  300
TAAAPAMDGF FEVNMSLPCL DLHGGGLEDI CAAHAPQFLP HCPPAAHYQH WLVDKEVASS  360
FPHRDKSGKE RWSDDAFVVR MNS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395364.11e-157PREDICTED: B-box zinc finger protein 20-like
TrEMBLM0SL660.0M0SL66_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P04990_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.17e-39salt tolerance homolog2