PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P05240_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 500aa    MW: 54474.6 Da    PI: 9.4576
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P05240_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-055880123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           + C+ C+k F r  nL+ H r H
  GSMUA_Achr4P05240_001 58 FICEVCNKGFQREQNLQLHRRGH 80
                           89*******************88 PP
2zf-C2H212.80.00037134156123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k++  +s+ k H +t+
  GSMUA_Achr4P05240_001 134 WKCDKCSKRYAVQSDWKAHSKTC 156
                            58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121711.8E-55780IPR022755Zinc finger, double-stranded RNA binding
Gene3DG3DSA:3.30.160.601.2E-55880IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.995880IPR007087Zinc finger, C2H2
SuperFamilySSF576672.2E-75880No hitNo description
SMARTSM003550.00525880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035512099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.2E-5122155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.2E-7129154No hitNo description
SMARTSM00355140134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MTMASSSVPL FGSIEEEKHV TQQQQPQPGS AVAAAAAAQP AAPPPKKKRN LPRNPSKFIC  60
EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN PKDVRRRVYV CPEPTCAHHD PSRALGDLTG  120
IKKHYCRKHG EKKWKCDKCS KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA  180
FCDALAQESA RNTQLLQSKP FHGFMQLQHL QTNTESSSPS AAAAATNLSN LGIFSDSSNR  240
SAVTNSSNVA MNQNAHLLVS DPFNTAGGSN GPNAIFAGNI VGNNLLDANM SPMCNNSVSN  300
ESMPPHMSAT ALLQKATQMG ATSSCISASS SLRGVGSLYS SAAKNAGSRT VFDGVESESH  360
FQDLVNSLTN ETSGILSGGN QQETGFSGFG ATDRLTRDFL GVGSMMRRMG GVLTQREEQH  420
LGIDMASLDP ELKTVLYAIL TCNISFLNCL SPSLALLLLD KKPVLFKSTE ANESFPSWVT  480
LFALRLSLYV LRDKQAAKDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35130195368Zinc finger protein JACKDAW
5b3h_F4e-35130195368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1011811e-115AK101181.1 Oryza sativa Japonica Group cDNA clone:J033029F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395398.11e-152PREDICTED: protein indeterminate-domain 5, chloroplastic-like
SwissprotQ8GYC11e-103IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLM0SL910.0M0SL91_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P05240_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.18e-97indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]