PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P05510_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

ERF

Protein Properties

Length: 92aa MW: 10250.4 Da PI: 10.4241

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P05510_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	72.9	5.3e-23	13	64	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+++AeIrdp g + +r++lg+fgtaeeAa+a+++a+ +++g GSMUA_Achr4P05510_001 13 TKYRGVRRRP-WGKYAAEIRDP---GrHGARVWLGTFGTAEEAARAYDEAAYQMRG 64 69******.******9...6445***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.9E-17	13	64	IPR001471	AP2/ERF domain
CDD	cd00018	1.89E-26	13	73	No hit	No description
PROSITE profile	PS51032	24.434	14	72	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.83E-24	14	73	IPR016177	DNA-binding domain
SMART	SM00380	8.2E-36	14	78	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.3E-33	14	73	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.4E-12	15	26	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.4E-12	38	54	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MGDGGDQKEG GETKYRGVRR RPWGKYAAEI RDPGRHGARV WLGTFGTAEE AARAYDEAAY 60 QMRGDLAVLN FPEEVRSRRR RGAVSPPKTG QN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-30	14	74	14	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid. {ECO:0000269\|PubMed:10607299, ECO:0000269\|PubMed:11768541, ECO:0000269\|PubMed:11971137}.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: The stronger expression mediated by Pseudomonas syringae tomato during an incompatible interaction (avirulent T1 avrPto strain) than during a compatible one (virulent T1 strain) requires the resistance PTO-R as well as the Pseudomonas resistance and fenthion sensitivity (PRF) gene products. This induction is independent of ethylene (ET), jasmonate (JA) and salicylic acid (SA), and subsequent transcription of PTI5 does not require de novo protein synthesis. Also induced by Xanthomonas oryzae strain PXOA avrXa10, by Pseudomonas fluorescens strain 2-79, by PTO and by cycloheximide. Seems to not be influenced by abiotic stresses (ET, SA, JA and wounding). {ECO:0000269\|PubMed:10607299, ECO:0000269\|PubMed:9878629}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018680553.1	9e-57	PREDICTED: ethylene-responsive transcription factor 14-like
Swissprot	O04681	1e-30	PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
Swissprot	Q9LTC5	6e-31	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	M0SLB8	2e-59	M0SLB8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P05510_001	4e-60	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	9e-24	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]