PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P05560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 230aa    MW: 25680.8 Da    PI: 11.2533
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P05560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00067103125123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++Cp+C ++F +   L  H rtH
  GSMUA_Achr4P05560_001 103 WRCPYCYRVFGSGQALGGHKRTH 125
                            58*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.7E-5327IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66426IPR007087Zinc finger, C2H2
SMARTSM003550.72426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280627IPR007087Zinc finger, C2H2
SuperFamilySSF576672.26E-580126No hitNo description
SMARTSM003550.41103125IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203103130IPR007087Zinc finger, C2H2
PfamPF139121.5E-11104127IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MERHRCKRCY RRFAHGRALA GHMRSHHVVP VRFPCPLPSP SVASSSSPDR ESDTESFLHR  60
WPKRRRSDGI GSSSRRRRSR FRCGTCRKDF SGASAAHHDA KLWRCPYCYR VFGSGQALGG  120
HKRTHLSSAV ATSPAPHLPH PPSPFAAAHR NNGGRDLNLP APLEEEAELS QQSSHASDFL  180
SPIRSPSETK KTPFWRQFES NPKARGSTKL HSRSLLFEAS IGNEDSIPSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16377RRRSDGIGSSSRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396593.12e-96PREDICTED: zinc finger protein ZAT1-like
TrEMBLM0SLC31e-164M0SLC3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P05560_0011e-165(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.11e-07C2H2-like zinc finger protein