PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P06440_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 157aa    MW: 17639.9 Da    PI: 9.8047
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P06440_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.56e-132978453
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53
                            kr++r+++NRe+ArrsR RK++ ++ L+    +L +eN++    l   +
  GSMUA_Achr4P06440_001 29 QKRQKRMISNRESARRSRMRKQKHLDDLTAQLNQLRKENSRILTSLTLTT 78
                           69*************************************98776665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.6E-182690IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-102674No hitNo description
PROSITE profilePS5021710.6452891IPR004827Basic-leucine zipper domain
PfamPF001702.7E-103071IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.53E-113080No hitNo description
CDDcd147029.98E-193182No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MASPGGTSSG SSLLQTSGSE EDLQALMDQK RQKRMISNRE SARRSRMRKQ KHLDDLTAQL  60
NQLRKENSRI LTSLTLTTRH HSAVEAENSV LRTQMVELGN RLQSLSEILH CLNGNTAITS  120
GLFCDGHQVN NSFSNPWNLM YMNQQPIMAS VGNMFLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14249RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395539.11e-113PREDICTED: bZIP transcription factor 11-like
SwissprotC0Z2L51e-39BZP44_ARATH; bZIP transcription factor 44
TrEMBLM0SLL11e-112M0SLL1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P06440_0011e-112(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44593367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.14e-36G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]