PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P06840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 254aa    MW: 27809.2 Da    PI: 7.1494
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P06840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.3e-16100150256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                            +ykGVr+++ +g+W+AeIrdp    +r  r +lg++ tae Aa+ + aa++++e e
  GSMUA_Achr4P06840_001 100 RYKGVRQRR-WGKWAAEIRDP----IRgVRLWLGTYATAEAAAEVYRAAARRIEEE 150
                            69****998.**********7....246************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.0E-10100150IPR001471AP2/ERF domain
CDDcd000181.15E-13100128No hitNo description
SuperFamilySSF541713.27E-15100148IPR016177DNA-binding domain
SMARTSM003806.0E-20100164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-21100152IPR001471AP2/ERF domain
PROSITE profilePS5103219.559100158IPR001471AP2/ERF domain
PRINTSPR003671.1E-8101112IPR001471AP2/ERF domain
PRINTSPR003671.1E-8123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKKSQGLSSF RPNSRKHLNG LIGSGKAARK VRIFFADPDA TDTSCSEDEE DKFGTESKRR  60
KRVLYEIPLS PAAKTLEIQR VSQHRAPKSL TSSTSAASGR YKGVRQRRWG KWAAEIRDPI  120
RGVRLWLGTY ATAEAAAEVY RAAARRIEEE KRSLLHHRHG PSNDSAGSVS SSCMSAPAGV  180
PPSPSSVLDI SLAAKPKGRP AAELLEELSM PEMEFGLDEE PFLVGELGED AIGLDDLPLS  240
EHQFDGDDFS FLDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8668142e-65DQ866814.2 Musa formosana copper/zinc superoxide dismutase (CSD1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395578.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
RefseqXP_009395579.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
TrEMBLM0SLQ10.0M0SLQ1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P06840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-18ERF family protein