PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P07010_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 328aa    MW: 37368.8 Da    PI: 5.937
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P07010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS929.5e-29701711105
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l++lL++cA+av+++d+ ++++l+++l++++s +g+p+qRl ay++e+L arl++s+s++ykal+++e +   ss+ l+++++++ev+
  GSMUA_Achr4P07010_001  70 LKQLLIACARAVADNDMINIEWLISELKQMVSVSGEPFQRLGAYLLEGLIARLSSSGSSIYKALKCKEPT---SSDLLSYMHILYEVC 154
                            689******************************************************************9...9************** PP

                   GRAS  89 PilkfshltaNqaIlea 105
                            P++kf++l aN aI ea
  GSMUA_Achr4P07010_001 155 PYFKFGYLSANGAIAEA 171
                            ***************98 PP
2GRAS194.18.7e-60172328217374
                   GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                            svs++++rd++L+lvkslsPkvv++veqe+++n+++F+ rfle++eyy+a+f+s++++lpr+++eri+vE+++l+r+ivn+vace ae
  GSMUA_Achr4P07010_001 172 SVSTRNHRDRLLRLVKSLSPKVVTLVEQESNTNTTPFFPRFLETMEYYTAMFESIDVTLPRDNKERISVEQHCLARDIVNIVACEDAE 259
                            789999********************************************************************************** PP

                   GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            r+erhe ++kW++r+ +aGF+p pls  +++++k+ll++++ + y +ee++g l+lgW++rpLv+ +aWr
  GSMUA_Achr4P07010_001 260 RVERHELFGKWKSRFLMAGFRPCPLSPLVNATIKTLLQNYS-EHYWLEERDGVLYLGWRNRPLVVSCAWR 328
                            *****************************************.55*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.8941309IPR005202Transcription factor GRAS
PfamPF035143.3E-2670171IPR005202Transcription factor GRAS
PfamPF035143.0E-57172328IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MHNSPSSQSF SASCVTEDPN DLKIRLREIE TAMLGPDSDI VESFENTYPG HLSLEPDAWR  60
QVMGIPRGDL KQLLIACARA VADNDMINIE WLISELKQMV SVSGEPFQRL GAYLLEGLIA  120
RLSSSGSSIY KALKCKEPTS SDLLSYMHIL YEVCPYFKFG YLSANGAIAE ASVSTRNHRD  180
RLLRLVKSLS PKVVTLVEQE SNTNTTPFFP RFLETMEYYT AMFESIDVTL PRDNKERISV  240
EQHCLARDIV NIVACEDAER VERHELFGKW KSRFLMAGFR PCPLSPLVNA TIKTLLQNYS  300
EHYWLEERDG VLYLGWRNRP LVVSCAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-24181328224375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395599.11e-110PREDICTED: scarecrow-like protein 21
SwissprotQ9LDL73e-87PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLM0SLR80.0M0SLR8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P07010_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-89GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]