PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P07170_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 201aa MW: 22987.2 Da PI: 8.6115

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P07170_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	43	96	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le F +r++ a ++++LA+kl+L+ +qV vWFqNrRa++k GSMUA_Achr4P07170_001 43 KKRRLSEDQVKLLEMSFMDERKLEAGRKAHLAAKLELDAKQVAVWFQNRRARHK 96 45689***********************************************99 PP
2	HD-ZIP_I/II	106.7	1.7e-34	43	134	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kkrrls++qvklLE+sF e+kLe rK++la +L+l+++qvavWFqnrRAR+k+kq+ + y Lk a+da++ e+++Le+ev++L+e GSMUA_Achr4P07170_001 43 KKRRLSEDQVKLLEMSFMDERKLEAGRKAHLAAKLELDAKQVAVWFQNRRARHKSKQVKEAYVELKLAHDAVVLEKCHLENEVSKLKE 130 9*************************************************************************************** PP HD-ZIP_I/II 90 elke 93 +l+e GSMUA_Achr4P07170_001 131 KLSE 134 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.953	38	98	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.88E-15	41	103	IPR009057	Homeodomain-like
SMART	SM00389	1.7E-15	41	102	IPR001356	Homeobox domain
CDD	cd00086	1.54E-13	43	99	No hit	No description
Pfam	PF00046	6.4E-16	43	96	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-16	45	103	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	73	96	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MTEEKKVQIP SLWASERCSQ MPQDSVGEKR TRRRRKKAKG DAKKRRLSED QVKLLEMSFM 60 DERKLEAGRK AHLAAKLELD AKQVAVWFQN RRARHKSKQV KEAYVELKLA HDAVVLEKCH 120 LENEVSKLKE KLSEAEEEVR KLASGMNGAS GGNGESGDGS PSSCFSAASL QWQREEAELM 180 CINEYDFTNY MMMEWADLYG V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	36	KRTRRRRKK
2	31	45	RRRRKKAKGDAKKRR
3	32	45	RRRKKAKGDAKKRR
4	33	46	RRKKAKGDAKKRRL
5	90	98	RRARHKSKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009395622.1	1e-146	PREDICTED: homeobox-leucine zipper protein HOX12
Swissprot	Q7XI85	6e-49	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	M0SLT4	1e-145	M0SLT4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P07170_001	1e-145	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-24	homeobox protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]