PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P07190_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 522aa    MW: 56246.6 Da    PI: 6.5682
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P07190_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS217.75.8e-671495213374
                   GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            e L+++A  ++s+d+ +a+ +L+rl+++  s   +p+qR+++ f+eAL   l       + a pp ++   + ++++  +k+fs++sP
  GSMUA_Achr4P07190_001 149 ESLIRAAYYLESNDFDAARVILSRLNQHiPSTVVSPLQRAVSLFKEALLGLLCP-----STAEPPIPA--LELVRHIDDHKVFSDLSP 229
                            579*************************666777*******************9.....222233333..358999************ PP

                   GRAS  90 ilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeel 172
                            ++ f+ +ta q + e ++g  + +H +Dfd + G+QW ++ q+La+R+    ++pp +RiT++ +   +++ e+   +e+L++fA++l
  GSMUA_Achr4P07190_001 230 VPHFATFTATQILIETLDGGaRSIHLVDFDFGLGVQWSSFAQELAERSgaslSSPPAVRITAFIA---EESAETAFAAENLRDFARNL 314
                            ******************98799*************************888778********999...4689999************* PP

                   GRAS 173 gvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse........ 251
                            ++++  n++ +  l +l l++  ++  gE +aV l  + +rl+ +    +  + ++L++v++ sP+vvv+v+ +   +s+        
  GSMUA_Achr4P07190_001 315 KISLVVNFVRVGGLGKLALNDVVLSGaGEPTAVVLTPSAFRLFGSGDGAQVSTATLLRFVRRASPRVVVFVDTDGGATSGvavahptl 402
                            ********9999**********99989***************9887777778**********************88877777888888 PP

                   GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                            s+ +r++e + +y+al++s+++ ++++   +  v ++  +  ++ +va+   e      +l+ Wre l  aG  p++lse a++qak 
  GSMUA_Achr4P07190_001 403 SLQRRVSEGVGHYAALLESVAEAAAATGAGEGAVQQV-ARAVVRPWVAATVGE---WPVRLGPWREILAGAGWVPLHLSEIAESQAKW 486
                            ********************76666666555566555.666667777776665...6888**************************** PP

                   GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            l+++ ++dg++v  ++ +lvl W++r+L  +SaWr
  GSMUA_Achr4P07190_001 487 LVQRAPVDGHHVARRNRALVLSWRGRELACTSAWR 521
                            **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.08121501IPR005202Transcription factor GRAS
PfamPF035142.0E-64149521IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MKHSEARTDS PRTHRRFSVP SKPLLLDSSP DNLNTNSILF APNLFYEPTS VLDPRLTSRF  60
VTAPSAAPAG VCEPPRLFRG GGNSHQHFPS SDQWYTASWL LPETPDFSPL PDDVNPSFLN  120
SHFDIPFDSF AAGDLVSSPS PGFDRSQLES LIRAAYYLES NDFDAARVIL SRLNQHIPST  180
VVSPLQRAVS LFKEALLGLL CPSTAEPPIP ALELVRHIDD HKVFSDLSPV PHFATFTATQ  240
ILIETLDGGA RSIHLVDFDF GLGVQWSSFA QELAERSGAS LSSPPAVRIT AFIAEESAET  300
AFAAENLRDF ARNLKISLVV NFVRVGGLGK LALNDVVLSG AGEPTAVVLT PSAFRLFGSG  360
DGAQVSTATL LRFVRRASPR VVVFVDTDGG ATSGVAVAHP TLSLQRRVSE GVGHYAALLE  420
SVAEAAAATG AGEGAVQQVA RAVVRPWVAA TVGEWPVRLG PWREILAGAG WVPLHLSEIA  480
ESQAKWLVQR APVDGHHVAR RNRALVLSWR GRELACTSAW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-1915352025378Protein SCARECROW
5b3h_A5e-1915352024377Protein SCARECROW
5b3h_D5e-1915352024377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395624.10.0PREDICTED: scarecrow-like protein 15
TrEMBLM0SLT60.0M0SLT6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P07190_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17202711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.12e-42GRAS family protein