PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P08360_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 258aa    MW: 27620.3 Da    PI: 5.426
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P08360_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY932.2e-2977134359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp v+++tY+ eHnh+
  GSMUA_Achr4P08360_001  77 DSWTWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPAVIVVTYSFEHNHT 134
                            99************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-3072136IPR003657WRKY domain
SuperFamilySSF1182904.32E-2574136IPR003657WRKY domain
SMARTSM007742.9E-3475135IPR003657WRKY domain
PROSITE profilePS5081131.21577136IPR003657WRKY domain
PfamPF031061.1E-2577133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTGSCSNEPG ASEADEVGDA SEANDGRPVS AGSTDDSQPV RSSAPCPKRC RRAVQKRVVT  60
MPISEAKGGG EGAPPPDSWT WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR KQVERSRVDP  120
AVIVVTYSFE HNHTWPVPRN HHHKHAAARP EEQLGQSGTP DSAERDEKFS DPIAEEESAL  180
TVDARGGFPW FADVCFTPSA SPSELEEQAA GGGGGAEEDS LFAGLGELPE YSVVLRRGLV  240
PASWLGTTGK LIREEGNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-1856133676Disease resistance protein RRS1
5w3x_D3e-1856133676Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395741.11e-166PREDICTED: probable WRKY transcription factor 65
TrEMBLM0SM530.0M0SM53_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P08360_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.12e-42WRKY DNA-binding protein 69