PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P08610_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Nin-like

Protein Properties

Length: 252aa MW: 28892.1 Da PI: 6.3985

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P08610_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.7	4e-27	137	186	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++ ++++++yF++pi++AAke++v+lTvLK++CR++GI+RWPhRk+ksl GSMUA_Achr4P08610_001 137 NDVGFDEIKNYFYMPITKAAKEMNVGLTVLKKRCRELGIARWPHRKMKSL 186 57889*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.598	121	206	IPR003035	RWP-RK domain
Pfam	PF02042	8.1E-22	139	186	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MKPVTHESNS CNKIVLLLRW CSGTDDLVPL PESLDPFDDT LGFSPSLISS DTSLPSVPCQ 60 YHVLPEPLNP VHLEDIDLEP FAWPHDCVST SNNEDLLLDP LPLNACDFPI VALDGESGWD 120 GKRTTEKRVD GRTSRLNDVG FDEIKNYFYM PITKAAKEMN VGLTVLKKRC RELGIARWPH 180 RKMKSLKSLI HNVQELGKGV CEESMRKELE TLEDHKRLME ENPEMQLTER TKKLRQACFK 240 ANYKRRRLSQ QF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	243	247	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009396639.1	1e-162	PREDICTED: protein RKD1-like
Swissprot	Q9FGD1	4e-39	RKD3_ARATH; Protein RKD3
TrEMBL	M0SM78	0.0	M0SM78_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P08610_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12888	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-41	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]