PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P08880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 165aa    MW: 18801.7 Da    PI: 7.6988
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P08880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-3087145159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYG+K++k+s++pr+YYrC++ gC+vkk ver++ed ++v +tYeg+Hnh+
  GSMUA_Achr4P08880_001  87 LDDGYKWRKYGRKKMKNSPYPRNYYRCSTVGCNVKKTVEREREDSRFVLTTYEGTHNHH 145
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-3274147IPR003657WRKY domain
SuperFamilySSF1182901.44E-2780147IPR003657WRKY domain
PROSITE profilePS5081131.18182147IPR003657WRKY domain
SMARTSM007746.1E-3387146IPR003657WRKY domain
PfamPF031061.4E-2388145IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MSSSSSFLQS SWGNDQPDNI IAAIDDFLAF DEDPQTAHAV LSPASQQQSP EFFQDHDKNE  60
NKSKGSLRGS SSGSRVAFRT KSELEVLDDG YKWRKYGRKK MKNSPYPRNY YRCSTVGCNV  120
KKTVERERED SRFVLTTYEG THNHHAPLPA TTLHQRLEGL PHTEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-2770147177Probable WRKY transcription factor 4
2lex_A5e-2770147177Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018680509.11e-122PREDICTED: probable WRKY transcription factor 50
TrEMBLM0SMA51e-121M0SMA5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P08880_0011e-122(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-35WRKY DNA-binding protein 50