PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P11090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YA
Protein Properties Length: 366aa    MW: 39687.1 Da    PI: 9.08
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P11090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.91.5e-32208264158
              CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k rkpylheSRh hA+rR+Rg+gGrF
  GSMUA_Achr4P11090_001 208 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IKVRKPYLHESRHLHAMRRARGCGGRF 264
                            69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-37206267IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.666207267IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.8E-28209264IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.0E-24210232IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860212232IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.0E-24241264IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MNRMNSRSLL YMSSVLLDLI GALDVGAAAV QLEHSSIAVS RVVFEGLHRR MESRPGGTNI  60
LDPSVQTAIP ATISAQPWWC GPVFAAVNTS KSPVVGTEAG QLRLSHGLDD TGDVNKEADN  120
FVSLSDGGLG EKNKSLQPTS NAITSMMPEI LSPHTQLELG QSITCATYPF ADPYFAGLVA  180
PYGTQALVHP QIIGMPHPRM PLPLEMTEEP VYVNAKQYHG ILRRRQSRAK AELEKKVIKV  240
RKPYLHESRH LHAMRRARGC GGRFLNTKKT DDGAAKTETH EGLNPSSPPL MPLAISSNSL  300
ISNCSGNADP SRIMQEGKLE SKVSVGRKEG YQEQSGSQFS QNEDYAGKQR AGILVNQPPS  360
RAVATQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-21208271265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396056.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_009396057.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_009396058.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
TrEMBLM0SMX40.0M0SMX4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P11090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.13e-49nuclear factor Y, subunit A9