PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P11160_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 233aa    MW: 25796.7 Da    PI: 9.8866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P11160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.4e-0788132554
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            h +rEr+RR+++ ++++ L ++l +       K +K +i++ A++++++L
  GSMUA_Achr4P11160_001  88 HMMRERKRREKLSQSYADLCSMLASG-----SKCDKNSIVKSATRHVQEL 132
                            889********************995.....5999999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.99883132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.67E-1284150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.65E-587133No hitNo description
PfamPF000104.4E-588132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1088150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-689138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEGDLLGAFF PELPLDYSSA AFLLSGLVPE FDAPRTAFVS YLRQDGPRTM VERSGSGRNI  60
HRSLIEMLRS IPRAEERRKA AASRGFRHMM RERKRREKLS QSYADLCSML ASGSKCDKNS  120
IVKSATRHVQ ELKGVKEALQ QRYEELKAKV LGSDPTEGEK VKIRAANLSS PMDSMIGVLR  180
CLQSMDATAK AVRAHLSSSE LSAVMSIDTK MAAADVERAI EGAAMEAEKR LRC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17695RRKAAASRGFRHMMRERKRR
29196ERKRRE
39297RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018680459.11e-146PREDICTED: transcription factor BHLH148-like
TrEMBLM0SMY11e-168M0SMY1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P11160_0011e-168(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.17e-21bHLH family protein