PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P11210_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 346aa    MW: 37568.1 Da    PI: 6.8378
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P11210_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.31.1e-12270295126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +ktelC+ + ++G+C+y d C+FaHg
  GSMUA_Achr4P11210_001 270 FKTELCNKWEESGECPYSDHCQFAHG 295
                            79***********************8 PP
2zf-CCCH23.59.5e-08308333126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            yktelCr    +GtC+yG rC+F H+
  GSMUA_Achr4P11210_001 308 YKTELCRMVVSGGTCPYGHRCHFRHS 333
                            9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.1E-17264302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-9266301IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-7269296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455269297IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-10270295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-9303335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-13303334IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5307334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126307335IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5308333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MQQEVVSPSN GDRLGSSITS PSFVSPDRRP QSPVYFNSGG DLPCTYPVFS PEDSLALLSP  60
LLPASGSVSI SPSSVYFDEV EAAATATENR LYLARLALQY QEMTENYDLC LSHLRDAAEE  120
LESLRRENAS LRAANVELTR RLCLLAGKHG GRVTISTAAA LADEFRGLSV AEPPPAEESP  180
TSRVSLPKSI SIRSSGYLKL NPGGGATSAA NRNGRFRLSN PVMIGSQRVS VGGGSTNKKG  240
ERSRGEDKEE EGGEGGGGAM EVEVYHQGMF KTELCNKWEE SGECPYSDHC QFAHGIAELR  300
PVLRHPRYKT ELCRMVVSGG TCPYGHRCHF RHSLSPSDHQ RLLLRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22270333467Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018680503.10.0PREDICTED: zinc finger CCCH domain-containing protein 9-like isoform X2
SwissprotQ6L5G12e-87C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLM0SMY60.0M0SMY6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P11210_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.16e-61C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]