PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P11430_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 164aa    MW: 18483.2 Da    PI: 11.5581
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P11430_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-201868155
                    AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+ +l+g
  GSMUA_Achr4P11430_001 18 TRFRGVRKRP-WGRFAAEIRDpWK----KARVWLGTFDSAEDAARAYDAAAIALRG 68
                           589*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-131868IPR001471AP2/ERF domain
CDDcd000182.68E-161878No hitNo description
PROSITE profilePS5103223.6171976IPR001471AP2/ERF domain
SMARTSM003801.4E-361982IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-231978IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-321977IPR001471AP2/ERF domain
PRINTSPR003672.6E-102031IPR001471AP2/ERF domain
PRINTSPR003672.6E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MRKGRSPAPE AAAAAVETRF RGVRKRPWGR FAAEIRDPWK KARVWLGTFD SAEDAARAYD  60
AAAIALRGPK AKTNFPVSTT TTSPPPLILP TFNPSAAARS KILEQERAGH VLELELFAKG  120
HLIWQPYRWG LIRDVRWRGR SRLMRFPQAI AEEEAARNRP GEEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-212081668ATERF1
3gcc_A6e-212081668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396099.12e-62PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_009396100.12e-62PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9LDE44e-32ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLM0SN081e-112M0SN08_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P11430_0011e-113(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.17e-22ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]