PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P11900_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family M-type_MADS
Protein Properties Length: 146aa    MW: 16270.9 Da    PI: 11.035
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P11900_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.81e-162069150
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           k+ien  +r vtfskRr+g++  A EL+  ++a +avi+fs++g+ y ys
  GSMUA_Achr4P11900_001 20 KKIENPERRAVTFSKRRKGLFVMAAELCAHTGAHAAVIVFSPSGRPYAYS 69
                           68*******************************************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.9551272IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-211271IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-221381IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-121434IPR002100Transcription factor, MADS-box
PfamPF003193.5E-202168IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-123449IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-124970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MASAVKSKRT SRGRQKIRIK KIENPERRAV TFSKRRKGLF VMAAELCAHT GAHAAVIVFS  60
PSGRPYAYSY PSVDEVLRRF LVGQFRDRAG LGGMQELVQM RALLLGEGDE RAAEPHRGAV  120
LEELQRGVEE LEKLRRLVLA KADVVG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396691.11e-100PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLM0SN553e-99M0SN55_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P11900_0011e-100(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-22M-type_MADS family protein