PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P11960_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 246aa    MW: 28393.3 Da    PI: 8.2179
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P11960_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.9e-131773148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqkyl 48
                           +g W+++Ed++l d++ ++G  +W++++++ g         ++R +k+c++rw +yl
  GSMUA_Achr4P11960_001 17 KGLWSPDEDQKLRDYILMHGVSCWSAVPAKAGelflhlahgLRRNRKSCRLRWINYL 73
                           678****************************************************97 PP
2Myb_DNA-binding40.37.1e-1379133148
                            TSSS-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+ + +E+e ++++  + G++         W++Ia +++ gRt++++k++w++yl
  GSMUA_Achr4P11960_001  79 RGKLSLQEEETILKLQSKIGNNkmtclmlaMWSLIALHLP-GRTDNEVKNYWNSYL 133
                            788999**********************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.6031277IPR017930Myb domain
SuperFamilySSF466891.48E-2114129IPR009057Homeodomain-like
SMARTSM007176.4E-101675IPR001005SANT/Myb domain
PfamPF002497.9E-121773IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-191880IPR009057Homeodomain-like
CDDcd001673.30E-72073No hitNo description
PROSITE profilePS5129413.0778137IPR017930Myb domain
SMARTSM007176.7E-778135IPR001005SANT/Myb domain
PfamPF002494.2E-1179133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2081136IPR009057Homeodomain-like
CDDcd001675.87E-883133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MRMEYKSCKQ PEVNYRKGLW SPDEDQKLRD YILMHGVSCW SAVPAKAGEL FLHLAHGLRR  60
NRKSCRLRWI NYLRPGLKRG KLSLQEEETI LKLQSKIGNN KMTCLMLAMW SLIALHLPGR  120
TDNEVKNYWN SYLKQKTSKP QESDTHSLKH SALNLSIPRL TKLEEQNDHI LSCLEDSEQS  180
VTPSTGDGSP KGMAADHLPK VLFADWFSFE QDNWESLFNL DDVRSSQVDD AIVLNGFKFS  240
NTYNDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-161113723128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396692.21e-164PREDICTED: transcription factor LAF1-like
TrEMBLM0SN610.0M0SN61_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P11960_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122962735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.13e-47myb domain protein 19