PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P12160_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 195aa    MW: 20966.8 Da    PI: 10.57
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P12160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043426123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C ++F +   L  H+r+H
  GSMUA_Achr4P12160_001  4 HRCKLCFRRFANGRALAGHMRSH 26
                           79********************6 PP
2zf-C2H212.60.0004284106123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ C k+F++   L  H  +H
  GSMUA_Achr4P12160_001  84 FQCGMCRKVFRSYQALGGHRASH 106
                            89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-4327IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39426IPR007087Zinc finger, C2H2
SMARTSM003550.026426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280627IPR007087Zinc finger, C2H2
PROSITE profilePS501579.07884106IPR007087Zinc finger, C2H2
SMARTSM003550.1284106IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-984108IPR007087Zinc finger, C2H2
SuperFamilySSF576677.37E-884134No hitNo description
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM003557.6112134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113134IPR007087Zinc finger, C2H2
PfamPF139123.1E-11113136IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MERHRCKLCF RRFANGRALA GHMRSHHVVP ARAPRPLPSP SPSASSSSPL AATAAEAEDE  60
DVARCLMLLS RDAWSKSRRP KSRFQCGMCR KVFRSYQALG GHRASHKRVG ANCCPYCYRV  120
FVSGQALGGH KRSHLSSSAA ATASTSPAVP LLRPPSPFTS AANNDTNSGI DLNLPAPDDE  180
AELSVVSIAT ESARK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396187.18e-68PREDICTED: zinc finger protein ZAT1-like
TrEMBLM0SN811e-138M0SN81_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P12160_0011e-139(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-26C2H2-like zinc finger protein