PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P12210_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Protein Properties

Length: 224aa MW: 24245.5 Da PI: 10.2286

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P12210_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.8	7.1e-12	52	99	56	99
TTEEEE-TTHHHHHHHHT--TT-EEEEE...E-SS.SEE..EEEEE-S CS B3 56 sgryvltkGWkeFvkangLkegDfvvFk...ldgr.sefelvvkvfrk 99 s++yv+tkGW++Fvk+++L++gD+v F + ++l+++++r+ GSMUA_Achr4P12210_001 52 SQSYVMTKGWSRFVKDKQLESGDTVSFGrasAGASaGHGRLFIGWRRR 99 899************************944322334666777777775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.8E-9	18	52	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.06E-15	25	84	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.75E-12	26	78	No hit	No description
Pfam	PF02362	1.1E-8	51	99	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.529	52	100	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.4E-9	53	104	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MPFAAPSSSS TSSVASDSAA PVEPEHMFDK VVTPSDVGKL NRLVIPKQYA ESQSYVMTKG 60 WSRFVKDKQL ESGDTVSFGR ASAGASAGHG RLFIGWRRRK QTQCRPPLPL PQIFSAARSS 120 APQWGGLFPF AVPPVYNMAS NHGQYGGGRP YSPPQVRVQP GGGVAGASLL LDSAAVIRGT 180 AKTKRVRLFG VDLECSEREE RGDTRRDLQV LLLPKHSAME EWSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	6e-28	23	99	3	113	B3 domain-containing transcription factor NGA1
5os9_B	6e-28	23	99	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009396193.1	1e-143	PREDICTED: B3 domain-containing protein Os03g0120900-like
Swissprot	Q8LMR9	6e-35	Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	M0SN86	1e-163	M0SN86_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P12210_001	1e-164	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	1e-31	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]