PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P12700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 295aa    MW: 33171.1 Da    PI: 6.0748
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P12700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.4e-105195655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                            ++Er RR++ N+ +  Lr+++P+      +K++K ++   A++YI++Lq
  GSMUA_Achr4P12700_001 51 IMAERERRKKFNKTLYDLRSVVPNI-----TKMNKTSVILDAINYIQELQ 95
                           689*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.3834594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1548112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.46E-114999No hitNo description
PfamPF000101.5E-75195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-1151100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1351110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEPYQIEYAN YWETEGFFDA VEFCSWDDEK TLSSSPDMAA QSTSSTLPKN IMAERERRKK  60
FNKTLYDLRS VVPNITKMNK TSVILDAINY IQELQEQERS LVEEISELES PKQITAPPHG  120
IKDEDLLHAQ MQRRRAASMS PIEAMEVSVA EMGNGISLVS ITCNKKWNAI VMVLELIESL  180
DLRIITANIT SSFGKVFLSL VIQADGRPSA YLKERIEANF KKKKNPFFLV AEEVITDIAG  240
LLLLHQLQQL SEGGLIVPVE GIGHTPELVN PHGSGIGGIV GECRGRRRRR RVLKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283290RGRRRRRR
2285290RRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260471e-73AC226047.1 Musa acuminata clone BAC MA4-86B3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018680153.11e-161PREDICTED: transcription factor bHLH35-like isoform X2
TrEMBLM0SND50.0M0SND5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P12700_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.14e-47bHLH family protein