PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P13170_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YC
Protein Properties Length: 146aa    MW: 16947.3 Da    PI: 4.7197
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P13170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.12.1e-143572135
                  NF-YC  1 qlksfwekq...iekatdfknhelPlarikkilkaded 35
                           ql++fw++q   ie++tdf+nh+lPlarikki+kaded
  GSMUA_Achr4P13170_001 35 QLQMFWADQyreIEQTTDFRNHSLPLARIKKIMKADED 72
                           89*****99999*************************9 PP
2NF-YC383.5e-127110369101
                  NF-YC  69 nkrrtlkksdiaaavtrtdifdflvdivprdel 101
                             +rrtl+k+diaaa++rtd+fdfl+divpr+e 
  GSMUA_Achr4P13170_001  71 EDRRTLQKNDIAAAISRTDVFDFLIDIVPREEG 103
                            579***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.79E-122794IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.6E-84972IPR009072Histone-fold
Gene3DG3DSA:1.10.20.109.2E-973100IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MDQQPGHPVP PMIGVPPGVP YQAYQNLYHQ QQQQQLQMFW ADQYREIEQT TDFRNHSLPL  60
ARIKKIMKAD EDRRTLQKND IAAAISRTDV FDFLIDIVPR EEGKEDVAHA LGGPPVDPLS  120
YYYEFEIPFG MYVLAGYFFL LNLQIC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17278RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396308.11e-73PREDICTED: nuclear transcription factor Y subunit C-6-like
SwissprotQ8LCG79e-32NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLM0SNI21e-104M0SNI2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P13170_0011e-105(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.27e-33nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]