PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P13590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TALE
Protein Properties Length: 569aa    MW: 63485.9 Da    PI: 6.932
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P13590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-093834201954
                            HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            Fe   n+yp+ +e+  LA+++gL+ +qV++WF N R +
  GSMUA_Achr4P13590_001 383 FEHflNPYPKDSEKLMLARQTGLSRSQVSNWFINARVR 420
                            665559******************************88 PP
2BELL101.18.3e-33232317172
                   BELL   1 erqelqkkkakLlsllee..............VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                            erq+lq+k +kLl +l+e              Vd+rYkqy++q+q+++s F+a+ag+g+akpYt+lAl++iSrhFrcL+dai++qi
  GSMUA_Achr4P13590_001 232 ERQDLQNKVSKLLGMLDEsnfdkfviisfslqVDRRYKQYYHQMQIIVSCFDAIAGCGAAKPYTALALQTISRHFRCLRDAISGQI 317
                            689999999999999986555555555555559****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.2E-48173315IPR006563POX domain
PfamPF075264.2E-44180314IPR006563POX domain
PROSITE profilePS5007112.422361424IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-27364435IPR009057Homeodomain-like
SMARTSM003891.6E-9364428IPR001356Homeobox domain
CDDcd000861.16E-12364425No hitNo description
SuperFamilySSF466898.13E-18365431IPR009057Homeodomain-like
PfamPF059208.0E-18381420IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MSTFYSMSND HSGSTPNLGL RDPGHAPYSE SPGPGNMMYL SFLNSGQYTD AVAGVTKTQQ  60
NHIELPGATS DISPGLTVGN SDMITSHLGS HGYNAWKDGR NEMLFMQTQS NVPIMQNQGL  120
SLSLSTHMPV PSIQYQPTSS GISFMGCHQS TSGNIGLLRE EHFQNRSFHG NVSPYRQSHI  180
PNSKYLRIAQ ELLDEVVNVG SALKQRADKS QRMASNPQEA TVNYSNELSP SERQDLQNKV  240
SKLLGMLDES NFDKFVIISF SLQVDRRYKQ YYHQMQIIVS CFDAIAGCGA AKPYTALALQ  300
TISRHFRCLR DAISGQIQAI RKNLGEPDNT SGKGGGLSRL RYIDQQLRQQ RAMQQFGMMQ  360
QHTWRPQRGL PESSVLILRA WLFEHFLNPY PKDSEKLMLA RQTGLSRSQV SNWFINARVR  420
LWKPMIEDMY KEEFGDTEID SNSSSENPPR LKEDIQSSED HDDMQNPATG RCQTSQISNS  480
SRPNVIPAMD MAELGRYGNS GVSLTLGLQQ CDVGHPASDD QQRFLAARAN DVYGTAAPVG  540
PDTADYDYAN MGDRRHRLGS THLLHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-14370427158Homeobox protein Meis1
4xrs_B1e-14370427158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396355.10.0PREDICTED: BEL1-like homeodomain protein 7 isoform X1
SwissprotQ9SIW11e-136BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLM0SNM40.0M0SNM4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P13590_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-131BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]