PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P14070_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 293aa MW: 33859.8 Da PI: 10.6394

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P14070_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.7e-19	140	194	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F+ +r++ +++++A++lgL+ +qV vWFqNrRa++k+ GSMUA_Achr4P14070_001 140 KKRRLSDEQVRFLEMSFRDERKLASGRKAHIAAELGLDGKQVAVWFQNRRARHKN 194 45689************************************************95 PP
2	HD-ZIP_I/II	107.7	8.8e-35	140	230	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kkrrls+eqv++LE+sF+ e+kL + rK+++a eLgl+ +qvavWFqnrRAR+k+kqlE+ y +Lk +++a++ e+++Le+ev +L+e GSMUA_Achr4P14070_001 140 KKRRLSDEQVRFLEMSFRDERKLASGRKAHIAAELGLDGKQVAVWFQNRRARHKNKQLEEAYLKLKLEHEAVVVEKCHLENEVLRLKE 227 9**************************************************************************************9 PP HD-ZIP_I/II 90 elk 92 +l GSMUA_Achr4P14070_001 228 KLL 230 985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.05	135	195	IPR001356	Homeobox domain
SMART	SM00389	2.3E-17	138	199	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-16	139	200	IPR009057	Homeodomain-like
CDD	cd00086	4.46E-14	140	196	No hit	No description
Pfam	PF00046	2.5E-16	140	194	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.4E-17	140	194	IPR009057	Homeodomain-like
PRINTS	PR00031	3.4E-5	166	175	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	170	193	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.4E-5	175	191	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MATVNSINLA SPPRTPLPIF SHGIHAIVAN GRRAFESTTT HLPINKSRNF NRCMHRRVFL 60 SLPTTPLVLQ EIRVSLFLRD SRQHERSFTL SIPTLVSNAS RLVHHMTFPF LAKANVIFSV 120 GDTRTRRRRL RRRKVKGDAK KRRLSDEQVR FLEMSFRDER KLASGRKAHI AAELGLDGKQ 180 VAVWFQNRRA RHKNKQLEEA YLKLKLEHEA VVVEKCHLEN EVLRLKEKLL EAEEEIRKLS 240 WSVNGGNLGS SFSAVSQQPL HGEFGTEAEA ELTYMDEYDL YNYTMEWTNP YGI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	142	RRRLRRRKVKGDAKKRR
2	130	143	RRRKVKGDAKKRRL
3	187	195	RRARHKNKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009396732.2	1e-125	PREDICTED: homeobox-leucine zipper protein HOX12-like isoform X1
Swissprot	Q7XI85	9e-46	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	M0SNS2	0.0	M0SNS2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P14070_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-29	homeobox protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]