PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P14920_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 79aa    MW: 9167.16 Da    PI: 5.5877
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P14920_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.4e-10653145
                           TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                           + +W++eE + +  a +++  +   +W+ +ar +g gR+++++k ++ 
  GSMUA_Achr4P14920_001  6 KSSWSEEENKSFELALALYDEEtpeRWHNVARAVGRGRSAEEVKRHYE 53
                           578*****************99************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.4E-9558IPR001005SANT/Myb domain
PfamPF002497.4E-8653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-6656IPR009057Homeodomain-like
PROSITE profilePS500906.888656IPR017877Myb-like domain
SuperFamilySSF466892.09E-12664IPR009057Homeodomain-like
CDDcd001677.34E-6856No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MASDPKSSWS EEENKSFELA LALYDEETPE RWHNVARAVG RGRSAEEVKR HYELLVKDIH  60
LIDSTKEPIF HYPPTRSQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-22175176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396744.18e-53PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN01e-23RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLM0SP072e-51M0SP07_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P14920_0013e-52(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-24RAD-like 6