PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P16120_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 457aa    MW: 50413.9 Da    PI: 6.2456
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P16120_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.7e-10293340455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  GSMUA_Achr4P16120_001 293 THSLAERVRREKISERMKLLQDLVPGC----SKATGKAVMLDEIIDYVQSLQ 340
                            8*************************9....7779****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-17287358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.81E-11287344No hitNo description
Gene3DG3DSA:4.10.280.102.1E-17289358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.885289339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7293340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSSGPSNQLL QCFLNLNSDH SIDPDTQLGS AMSSFMSSQS SNSAAPAKSC SFRELGARLQ  60
RIDDSSEEVS PRSRFTDASG NSSPKGDLSK LDNVRRHLPQ AMGGLTIAGN LALAHLDQFA  120
ACPGFVESAA RFSSLDDQDR CWRSSHLELP GNAVLHSSVA SNQFPTVRYA ELWNSREETS  180
VSDPISVSGE ASLGAPRDSN AKKRKAPLKS KEKDTIQPKS VIDPPKVADE EDSDAKRWRS  240
TGNNNEIGNE QNDGARTRGN SEEKQERESN DKPSEPPKDY VHVRARRGQA TDTHSLAERV  300
RREKISERMK LLQDLVPGCS KATGKAVMLD EIIDYVQSLQ RQVEFLSMKL ATVNPELDFN  360
NLANFRANDM IQICRPVPDS VYQVEMSMAS SHAKQPQQRN RISSHCFMNM LDPTCHLSLI  420
AHQAYLNGIG DASSQLGTFW EDDLQSVASF WNFHGGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195204PRDSNAKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396799.10.0PREDICTED: transcription factor bHLH77-like
TrEMBLM0SPC60.0M0SPC6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P16120_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-58bHLH family protein