PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P16460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 531aa    MW: 58713.5 Da    PI: 7.0057
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P16460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3112.8e-951325302374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevs 88 
                             +lL ecA+av++++ +++q+l++ l+el++p+gd  q+la+yf+++L arl++s++++  +l++ ++++  s +++  + l f+e+s
  GSMUA_Achr4P16460_001 132 SHLLPECARAVAERNSQRVQQLMWMLNELSTPYGDVDQKLASYFLQGLFARLTSSGPRTLLSLSAASDHNC-SFDSTRRTALrFQELS 218
                            589*******************************************************9988877777633.44444444446***** PP

                   GRAS  89 PilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeelee 160
                            P+  f+h++aN aIle++ ++      +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s+ s+          ++ ++e
  GSMUA_Achr4P16460_001 219 PWSSFGHVAANGAILESFLQSssssrtQRFHILDLSNTFCTQWPTLLEALATRSsDDTPHLSITTVVSSPSSssssapsssMQRVMKE 306
                            ******************888788888899************************8889******9987555468999999888999** PP

                   GRAS 161 tgerLakfAeelgvpfefnvlvak.rledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
                            +g+r++kfA+ +gvpf+fnv+ +  +l dl+l++L++++    alaVn+v  lh +     +   +rd++  ++++l+P+++++ve+e
  GSMUA_Achr4P16460_001 307 IGQRMEKFARLMGVPFRFNVVNHPgNLLDLDLDRLDLREggAAALAVNCVNTLHGVS----PAGCRRDTLFAAFRRLQPRILTIVEEE 390
                            ********************95556**************87789************8....44446799******************* PP

                   GRAS 246 adhnse........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                            a+++++         Fl+ f e+l+++sa +++le+++pr+s+er  +Er+  gr++v++vac  ae++er+ t++ W++r+++aGF+
  GSMUA_Achr4P16460_001 391 AELDAAaggeedrdAFLKVFGESLRFFSAYYETLEESFPRTSNERLALERA-AGRAVVDLVACPAAESTERRDTAAGWSRRMQAAGFE 477
                            99977778999999*************************************.************************************ PP

                   GRAS 326 pvplsekaakqaklllrkvk.sdgyrveee...sgslvlgWkdrpLvsvSaWr 374
                            p+++s+++a++a++llr++  ++ +rv e     + ++l Wk++p+v++SaW+
  GSMUA_Achr4P16460_001 478 PAQFSDDVADDARALLRRYRkGWSMRVAEVagrGAGIFLEWKEQPVVWASAWK 530
                            ********************777788886544256677**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.585105506IPR005202Transcription factor GRAS
PfamPF035149.6E-93132530IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MDAIFRLFRL QTPDPQSCQN SSSKSSKAHS KQQHHHHYYI HTSSLHQQEQ CQEECGVGRC  60
HLYMDEEDFS SSSSSSKHHR HRPLSASAST TPTPTPLFNP NDLSLLRDLS LDFSPASSSS  120
ANASSAGGRL ASHLLPECAR AVAERNSQRV QQLMWMLNEL STPYGDVDQK LASYFLQGLF  180
ARLTSSGPRT LLSLSAASDH NCSFDSTRRT ALRFQELSPW SSFGHVAANG AILESFLQSS  240
SSSRTQRFHI LDLSNTFCTQ WPTLLEALAT RSSDDTPHLS ITTVVSSPSS SSSSAPSSSM  300
QRVMKEIGQR MEKFARLMGV PFRFNVVNHP GNLLDLDLDR LDLREGGAAA LAVNCVNTLH  360
GVSPAGCRRD TLFAAFRRLQ PRILTIVEEE AELDAAAGGE EDRDAFLKVF GESLRFFSAY  420
YETLEESFPR TSNERLALER AAGRAVVDLV ACPAAESTER RDTAAGWSRR MQAAGFEPAQ  480
FSDDVADDAR ALLRRYRKGW SMRVAEVAGR GAGIFLEWKE QPVVWASAWK P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-15812553181474Protein SHORT-ROOT
5b3h_B1e-15812553127420Protein SHORT-ROOT
5b3h_E1e-15812553127420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396892.10.0PREDICTED: protein SHORT-ROOT 1-like
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLM0SPG00.0M0SPG0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P16460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-121GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]