PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P16600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 247aa    MW: 27403.5 Da    PI: 8.7479
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P16600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.6e-21103152255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +++GVr+++ +grW+AeIrdp   g+ kr++lg+f+taeeAa+ ++ a+ +l+g
  GSMUA_Achr4P16600_001 103 RFRGVRRRP-WGRWAAEIRDP---GQGKRVWLGTFDTAEEAAAVYDTAAVRLRG 152
                            69*******.**********8...435*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-13103152IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22103161IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-30103160IPR001471AP2/ERF domain
SMARTSM003804.3E-35103166IPR001471AP2/ERF domain
PROSITE profilePS5103224.223103160IPR001471AP2/ERF domain
PRINTSPR003671.6E-10104115IPR001471AP2/ERF domain
CDDcd000181.60E-22111159No hitNo description
PRINTSPR003671.6E-10126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDPTNAAGTA VRLSEHVVVI RKTIPASEAA GWRWRDRKRR VVRIRFDDAD ATDSSSGEDA  60
EVRGRRRVRR HVHEVGIEVA PGRQAAPRKR QVKGAVGGER ARRFRGVRRR PWGRWAAEIR  120
DPGQGKRVWL GTFDTAEEAA AVYDTAAVRL RGPKAVTNFS PTYAARAETD GDDGWGKGDG  180
ADTCGESRFS PRSVLCYPEE RSAPFGCLCG GEADALEAPP FCLAEFYSPR RQLWEVEFGE  240
LDADEFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1996163875Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396877.11e-176PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLM0SPH41e-174M0SPH4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P16600_0011e-175(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15640615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.19e-08cytokinin response factor 3