PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P16790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 190aa    MW: 21102.9 Da    PI: 7.0961
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P16790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.41.6e-40341331100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+C+ +Cvlapyfp ++p +f  +h++FGasn++k+l++lpe +r da+sslvyeA+arardPvyG++g+i +lq+q e
  GSMUA_Achr4P16790_001  34 PCAACKILRRRCSGGCVLAPYFPPTEPLEFTTAHRVFGASNIIKFLQELPEIQRADAASSLVYEANARARDPVYGSAGIIYQLQRQAE 121
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                             l+++la++++e
  GSMUA_Achr4P16790_001 122 GLQSQLARVRAE 133
                            *******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.64333134IPR004883Lateral organ boundaries, LOB
PfamPF031956.5E-4034131IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDASNTFCRS TSSPFPSTSP LPKPPIHHPV VHSPCAACKI LRRRCSGGCV LAPYFPPTEP  60
LEFTTAHRVF GASNIIKFLQ ELPEIQRADA ASSLVYEANA RARDPVYGSA GIIYQLQRQA  120
EGLQSQLARV RAELAAMQAQ HENLISILSV KPWPFPAGFE EHYSPYMYRG GFSSLDEYSQ  180
ASMWEESLWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-38291346111LOB family transfactor Ramosa2.1
5ly0_B4e-38291346111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396864.21e-140PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9SK082e-56LBD11_ARATH; LOB domain-containing protein 11
TrEMBLM0SPJ31e-138M0SPJ3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P16790_0011e-139(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-58LOB domain-containing protein 11