PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P16980_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 507aa    MW: 55328.3 Da    PI: 5.4063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P16980_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12349394454
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            +h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  A+ YI++L
  GSMUA_Achr4P16980_001 349 NHVEAERQRREKLNQRFYALRSVVPNV-----SKMDKASLLGDATTYINEL 394
                            799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-3167228IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.111345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-18348413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.12E-14348399No hitNo description
Gene3DG3DSA:4.10.280.102.5E-18349412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-10349394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-16351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MNLCADDSAS MMEALIATAA DLQGCPWAVV SPPPRPPAPV TPSDVSRSFS ATATAPVPAP  60
HLDKEMLHER LQALIEGVRD SWTYVILWQS SVDTDTGESL LVWADGCYKG CEEDKRKQQP  120
AAASAASAAE QVRRKRVLRE LNSLIDGDER SSSANEAAED EALFSGDPSW LAGADRLAVA  180
PCDRARQATV FGIQTMVYVP VSPGVLELGS TQLISHSSEI TSKIRILFDL NSLQMPLANA  240
AAGSTQPFFA RELNFSELLH TGPAAPLQSV KPESDENGNF IGSKRNSSAA IVASNLFSSH  300
QIAAAGADSD HSDTERSMRK MGSSLLTDPE KRPRKRGRKP ANGREEPLNH VEAERQRREK  360
LNQRFYALRS VVPNVSKMDK ASLLGDATTY INELRVKLQS LESEKEGLEA QTTNGNGRCY  420
GVEMEVKMLD SEAMIRLQCQ NTNHPTAMLM SALKDLNLDV YYASVSVVKD LMIQQATVKM  480
SSREYTQEQL SSALYYRVAA EPPPASR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-30602312195Transcription factor MYC3
4rqw_B1e-30602312195Transcription factor MYC3
4rs9_A1e-30602312195Transcription factor MYC3
4yz6_A1e-30602312195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114135KRKQQPAAASAASAAEQVRRKR
2330338KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-AACGTG-3') found in a number of promoters of jasmonate-induced genes (PubMed:15231736). Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:30518626). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). Acts synergistically with EOT1 in the transactivation of TPS5 (PubMed:24884371). Involved in type VI glandular trichome development (PubMed:30518626). Involved in the activation of terpene synthases required for volatile mono- and sesquiterpenes synthesis by the glandular cells of type VI trichomes (PubMed:30518626). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24884371, ECO:0000269|PubMed:30518626}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by methyl jasmonate and wounding. {ECO:0000269|PubMed:15231736}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020094338.11e-172LOW QUALITY PROTEIN: transcription factor MYC2-like
SwissprotA0A060KY901e-126MYC1_SOLLC; Transcription factor MYC1
TrEMBLM0SPL20.0M0SPL2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P16980_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.12e-95bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]
  3. Xu J, et al.
    SlMYC1 Regulates Type VI Glandular Trichome Formation and Terpene Biosynthesis in Tomato Glandular Cells.
    Plant Cell, 2018. 30(12): p. 2988-3005
    [PMID:30518626]