PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P17040_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HSF

Protein Properties

Length: 487aa MW: 54617.2 Da PI: 5.061

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P17040_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.9	5e-36	39	131	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+y++++d++++ ++sw ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g GSMUA_Achr4P17040_001 39 FLSKTYDMVDDPATDAIVSWGPENNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRG 117 9******************999*************************************999.........******* PP XXXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkkse 103 +k+ll++i+r+k + GSMUA_Achr4P17040_001 118 QKHLLKTINRRKPS 131 *********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.1E-39	33	123	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.2E-63	35	128	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	7.75E-36	35	128	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.2E-32	39	128	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.3E-20	39	62	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.3E-20	77	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	78	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.3E-20	90	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MEHSCGSGGV DGGQGATTAK KERASVPNPG LNGNVPPPFL SKTYDMVDDP ATDAIVSWGP 60 ENNSFVVWNP PEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGQKH 120 LLKTINRRKP SHVGKFGLEE EVERLKRDKN VLMQELIRLR QQQQASDHQL QTLMKSLKGM 180 EQRQQQMMSF LAKAMRSPGF FTQLVEQNDR SRRITGVNKK RRLPKEGSSD GEKPEGQIVK 240 YQPLINEAAK AMLRQILKMN TSTMLESVGT SDNLFIENFH SPSETFDSTS SLNSAVTLSD 300 VPSNSGVSFM PASSGFSAIC SASAESSDHI PEFPELLEIV ANDDAINIPV ENLVVPEPEN 360 LYVNPNVSAL QEAVPIETDD HSADCNVNFH NTDEKLPGIV DAFWEQFLMA SPLSGDTEEV 420 ESTLQEAKEY QQSNVDSEWN STHHMNHLTE QMGLLSSDPK AGNFSMKYHL YIWFCIIAGS 480 NLFFFLL

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MEHSCGSGGV DGGQGATTAK KERASVPNPG LNGNVPPPFL SKTYDMVDDP ATDAIVSWGP  60
ENNSFVVWNP PEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGQKH  120
LLKTINRRKP SHVGKFGLEE EVERLKRDKN VLMQELIRLR QQQQASDHQL QTLMKSLKGM  180
EQRQQQMMSF LAKAMRSPGF FTQLVEQNDR SRRITGVNKK RRLPKEGSSD GEKPEGQIVK  240
YQPLINEAAK AMLRQILKMN TSTMLESVGT SDNLFIENFH SPSETFDSTS SLNSAVTLSD  300
VPSNSGVSFM PASSGFSAIC SASAESSDHI PEFPELLEIV ANDDAINIPV ENLVVPEPEN  360
LYVNPNVSAL QEAVPIETDD HSADCNVNFH NTDEKLPGIV DAFWEQFLMA SPLSGDTEEV  420
ESTLQEAKEY QQSNVDSEWN STHHMNHLTE QMGLLSSDPK AGNFSMKYHL YIWFCIIAGS  480
NLFFFLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	4e-27	37	131	18	123	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009396840.1	0.0	PREDICTED: heat stress transcription factor A-1-like
Swissprot	Q84T61	1e-180	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	M0SPL8	0.0	M0SPL8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P17040_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-122	heat shock transcription factor A1D

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]