PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P17570_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 367aa    MW: 41109.3 Da    PI: 9.5715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P17570_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-11249296455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  GSMUA_Achr4P17570_001 249 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 296
                            8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-18243314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-9243300No hitNo description
Gene3DG3DSA:4.10.280.103.8E-18245313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.221245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-8249296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MKQHIYNALF IARLLPWTIF LYFSTQRIEI SSNQIDRSRP MEWGPSALRV EHEKRQEGTR  60
KREANAVTQP PSSPKTQNPH CLQIRSLRSG VGIRRHCRRC ELPHMDPPPL MPQLPEMWRF  120
PMVAAPPPSA SGPRAGRTGG DASVAGSTVT EQSGRSRGRR RRGDPPPGRA AEDESSKLES  180
TSSGDDLTDT EAKRLKTFKS TDENDDIKTE AEASLGISSK LADQNPQPPE APKQDYIHVR  240
ARRGQATDSH SLAERARREK ISERMKILQD LVPGCNKVIG KASVLDEIIN YIQALQRQVE  300
FLSMKLEAVN SHMDTAIEAF PPKDFNAQPY DTTSSLAFSS QATREYEQVS GTEWLHMQVG  360
SAFKRVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396939.10.0PREDICTED: transcription factor bHLH79 isoform X1
SwissprotQ69WS31e-92BH094_ORYSJ; Transcription factor BHLH094
TrEMBLM0SPS00.0M0SPS0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P17570_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-70BIG PETAL P