PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P17880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 618aa    MW: 70244 Da    PI: 8.1744
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P17880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.82.3e-165589135
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                           C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  GSMUA_Achr4P17880_001 55 CHHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 89
                           ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-124792No hitNo description
SMARTSM004019.9E-1049101IPR000679Zinc finger, GATA-type
CDDcd002025.30E-1654100No hitNo description
PfamPF003203.8E-145589IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2665588IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-125589IPR013088Zinc finger, NHR/GATA-type
PfamPF139191.7E-8332415IPR028020ASX homology domain
PfamPF165501.1E-8346411IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MDLNQILNLN YTTIKNSFFF FSSFRFFWWI SYLVVVNIAN RKKQGVVEMG KNGPCHHCGV  60
TSTPLWRNGP PDKPVLCNAC GSRWRTKGSL TNYTPLHARE AFDLENLRTF KVESISFKPK  120
EQQLQKKRRS SNPLESLHEM RYSDQNFCKI VEGNTSNRSS TGSAISVSES CAHVGTIDAN  180
DMTGPAKSNV WESLVPSKKR TSATHPKVSP VEKLTKDLYS IFYEQQSSNL SGSSEEDLIY  240
ESGTPLDYTE IGYGGLLIRH PNSEYIEDES EASSHPVDKS YIINERYAGL MSFPLDTKSK  300
GKNFSDSGTH KLKNLTQHMS QETAMRDKTF GEKLKILQDK DSPLLSADLN DIINFDIFMK  360
YLANEEKQLL MTYLPSIDTV RSPESLRTMF RSPQFCETLS DFQQLLQEGT FDLSFSEANV  420
EDCRTLKRLI LHDLKRFRWV EYYEKLKIKG RKGKAIGSKF PGIDNLVSIK RPHDSRNQNS  480
SDLKATTKSP KRACKHVVSS SPSNNLHHLE SSDTRSKLTN NEDSFEKNEC DHFRHRNFQA  540
SPLDICSMSV PSRYTADSSD HDLLLNVPSN ASFPEAELLH CHPWKEKSSS LAESVVAEIE  600
ESSSRFQSSS LRNKPKIH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397006.10.0PREDICTED: GATA transcription factor 27-like isoform X1
TrEMBLM0SPV10.0M0SPV1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P17880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-106GATA transcription factor 26