PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P18010_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 145aa    MW: 16716.1 Da    PI: 8.7589
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P18010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.12e-104364526
                           --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                           +C+ f++tG C++G +C FaHg
  GSMUA_Achr4P18010_001 43 PCPEFRQTGACRRGQKCEFAHG 64
                           7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8213866IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013965IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-74367IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-84364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-64369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-471102IPR000571Zinc finger, CCCH-type
SMARTSM00356867497IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MYEFKVKRCA KAYPHQWMTC PYAHRGEKAR RRDPRRFPNH GIPCPEFRQT GACRRGQKCE  60
FAHGVFEFWL HPTRYRTRMC ISGPACRRKI CFFAHTVDEL RPEGLGGGVP AGVGKLAEGT  120
SAGGPEEREE EFAEPDLRWV YDLVD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397042.17e-98PREDICTED: zinc finger CCCH domain-containing protein 35-like
SwissprotP937556e-46C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLM0SPW41e-102M0SPW4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P18010_0011e-103(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-47CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]