PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P18180_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 146aa    MW: 16900.4 Da    PI: 9.2886
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P18180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.8e-191461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT+eEd++lv +++q+G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr4P18180_001 14 RGSWTPEEDQILVAYIRQHGHGNWRALPKQAGLLRCGKSCRLRWVNYL 61
                           89******************************99************97 PP
2Myb_DNA-binding54.92e-1767112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T+eE+e ++++++ +G++ W++Ia +++ gRt++++k+ w+++l
  GSMUA_Achr4P18180_001  67 RGNFTKEEEETIIRLHEDYGNR-WSAIATKLP-GRTDNEIKNVWHTHL 112
                            89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.425961IPR017930Myb domain
SuperFamilySSF466891.52E-3110108IPR009057Homeodomain-like
SMARTSM007176.1E-151363IPR001005SANT/Myb domain
PfamPF002492.4E-171461IPR001005SANT/Myb domain
CDDcd001672.37E-111661No hitNo description
PROSITE profilePS5129426.13262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-2765114IPR009057Homeodomain-like
SMARTSM007175.6E-1666114IPR001005SANT/Myb domain
PfamPF002495.5E-1667112IPR001005SANT/Myb domain
CDDcd001671.03E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MVRAPCCEKM GLKRGSWTPE EDQILVAYIR QHGHGNWRAL PKQAGLLRCG KSCRLRWVNY  60
LRPDIKRGNF TKEEEETIIR LHEDYGNRWS AIATKLPGRT DNEIKNVWHT HLKKLLDLLG  120
ASDSGDKDFW LRVFMGAGDL QELSQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396976.11e-82PREDICTED: myb-related protein Myb4-like
SwissprotQ7XBH41e-72MYB4_ORYSJ; Transcription factor MYB4
TrEMBLM0SPY11e-105M0SPY1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P18180_0011e-105(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-71myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]