PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P18820_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 205aa    MW: 22467.3 Da    PI: 6.5018
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P18820_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-1069109954
                            HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             r RR+ri ++f  L++l+P        K++ +++Le+A++Y+k L
  GSMUA_Achr4P18820_001  69 ARERRHRISDRFKILKSLVPGG-----SKMDTVSMLEEAINYVKFL 109
                            699*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.75160109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1465121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-1366115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.77E-1466113No hitNo description
Gene3DG3DSA:4.10.280.106.1E-1266114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-869109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDPFADSHFQ LMESYHYQPS DSCPPLATSH WVAEGEPTSS LGFITKERRR GGKRGGGVKL  60
STDPQSVAAR ERRHRISDRF KILKSLVPGG SKMDTVSMLE EAINYVKFLK SQIWLHQAAL  120
MLHPDDCSSL LSLSSPALSA NANAIGTATI NAGVDASCST PCLMLPNDQM SSFSTAPPQQ  180
SFSAFPYCSF QEGEDEMFHH GSFIY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15056GGKRGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811690.12e-46transcription factor LAX PANICLE 1
TrEMBLM0SQ451e-152M0SQ45_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P18820_0011e-152(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85533243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.14e-30APRATAXIN-like