PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P19300_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 256aa MW: 28517 Da PI: 8.8259

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P19300_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.7	2e-31	89	143	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHerFve+ ++LGG+ekAtPk il+lm+ gLt++hvkSHLQkYR+ GSMUA_Achr4P19300_001 89 KTRIRWTQDLHERFVECANRLGGAEKATPKGILKLMNSAGLTIYHVKSHLQKYRI 143 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.63	86	146	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.1E-29	87	144	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.31E-16	87	144	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-22	89	144	IPR006447	Myb domain, plants
Pfam	PF00249	3.8E-8	93	142	IPR001005	SANT/Myb domain
Pfam	PF14379	5.7E-21	173	219	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MISVIFYVKI PSLIRGADRQ VGVPPVHLLS FMIPLYVSLP LLFCSVLLFV LVGCGPSSSS 60 TEKQNSQLQT EKQLPKALST APGTALSNKT RIRWTQDLHE RFVECANRLG GAEKATPKGI 120 LKLMNSAGLT IYHVKSHLQK YRIAKHMPER AEGKTLLLRA AANVAELDPK IGMQFTEALR 180 LQLDVQVRLH EQLEIQKNLQ LRIEAQSRKL QQMLEEQAKS NTSHVQTENM DVSSAGDSPA 240 ESFDDAQLLH QVSIED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-23	89	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-23	89	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-23	89	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-23	89	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-23	89	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-23	89	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-23	89	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-23	89	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009398775.1	1e-140	PREDICTED: protein PHOSPHATE STARVATION RESPONSE 2-like
Swissprot	Q0WVU3	5e-59	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	M0SQ93	0.0	M0SQ93_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P19300_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6933	37	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-61	G2-like family protein