PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P20280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 126aa    MW: 14242.1 Da    PI: 10.2904
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P20280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-162169355
                    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  GSMUA_Achr4P20280_001 21 FRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYCTPVAAARAYDTALFYLRG 69
                           8*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.4432077IPR001471AP2/ERF domain
SMARTSM003802.2E-332083IPR001471AP2/ERF domain
PRINTSPR003674.1E-112132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-292178IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-202179IPR016177DNA-binding domain
PfamPF008474.8E-102169IPR001471AP2/ERF domain
CDDcd000184.97E-252179No hitNo description
PRINTSPR003674.1E-115979IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MEVERQLPPK KAARKPKERP FRGIRMRKWG KWVAEIREPN KRSRIWLGSY CTPVAAARAY  60
DTALFYLRGR AARLNFPDDI SVSDDADHEA IAMSAASIRK KAAENPDLNQ TPGPESSDGE  120
WSSSLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1521831578Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0234825e-49AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBankAK1077755e-49AK107775.1 Oryza sativa Japonica Group cDNA clone:002-133-B12, full insert sequence.
GenBankAP0025365e-49AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBankAP0149625e-49AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126145e-49CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398669.18e-82PREDICTED: ethylene-responsive transcription factor ERF011-like
SwissprotQ9SNE16e-38ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLM0SQJ16e-87M0SQJ1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P20280_0011e-87(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.12e-37cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]