PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P20400_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TALE
Protein Properties Length: 384aa    MW: 42309.3 Da    PI: 5.559
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P20400_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.6e-073333652254
                            SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                             +yp+++++++L +++gL+ +q+ +WF N+R +
  GSMUA_Achr4P20400_001 333 WPYPTEDDKAQLVEETGLQLKQINNWFINQRKR 365
                            58*****************************87 PP
2ELK30.48.7e-11286307122
                    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                            ELKh+L+++Y+++++++++E++
  GSMUA_Achr4P20400_001 286 ELKHELKQGYKEKIVDVREEIL 307
                            9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.6E-19115159IPR005540KNOX1
PfamPF037902.3E-17117158IPR005540KNOX1
SMARTSM012566.4E-26173228IPR005541KNOX2
PfamPF037912.8E-18178227IPR005541KNOX2
PROSITE profilePS512139.83286306IPR005539ELK domain
PfamPF037895.1E-7286307IPR005539ELK domain
SMARTSM011888.9E-4286307IPR005539ELK domain
PROSITE profilePS5007111.337306369IPR001356Homeobox domain
SMARTSM003896.7E-11308373IPR001356Homeobox domain
SuperFamilySSF466893.25E-16308372IPR009057Homeodomain-like
CDDcd000863.79E-12309370No hitNo description
Gene3DG3DSA:1.10.10.604.9E-25313370IPR009057Homeodomain-like
PfamPF059208.6E-18326365IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAFHNHLSHE LTLPQYAEEQ LGGDSPTVLM TTVGSGPTWL NSAILRRQGH HYADGSFLHL  60
QTTVDSSSPP DEAPVSSDSV MVAAIPAGGE FVEAEALAQR TGGEAAAGEG TWQSARYKAE  120
ILAHPLYEQL LSAHVACVRI ATPVDQLPRI DAQLAQSQQV VSKYSVLGGG GSSGQILGDG  180
KELDRFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWELE QALQSLTGVS PGEGTGATMS  240
DDDDDDQVDS ETNLLDGSLG VPDSMGFGPL VPTDSERSLM ERVRQELKHE LKQGYKEKIV  300
DVREEILRKR RAGKLPGDST CTLKAWWQSH SKWPYPTEDD KAQLVEETGL QLKQINNWFI  360
NQRKRNWHTN PSSSSSLKSK RKRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A5e-13309373872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362382RKRNWHTNPSSSSSLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398657.10.0PREDICTED: homeobox protein knotted-1-like 13 isoform X1
SwissprotP480001e-168KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLM0SQK30.0M0SQK3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P20400_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-153KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]