PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P21070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 300aa    MW: 32266.4 Da    PI: 6.6392
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P21070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.7e-09154198554
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  GSMUA_Achr4P21070_001 154 HSIAERLRRERIAERIRALQELVPNT-----NKTDRAAMLDEILDYVKFL 198
                            99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-15147208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-14151208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6154198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-10155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MANHQPPPPQ QQPEGIVDDF FEQIFSMPSS YVAAGDTGLA GPDGGLAGGP LHRNSADAAG  60
GGGPFSLGLS LEQGSSSGKR HREDPEGKTE RDTFPSAGLF APGFGHLQSY QIRPNPPPQA  120
FHGQAKQGGV ASMPQPPAPR PKVRARRGQA TDPHSIAERL RRERIAERIR ALQELVPNTN  180
KTDRAAMLDE ILDYVKFLRL QVKVLSMSRL GGAGAVAQLI ADIPLSVEGE AGSKQQVWEK  240
WSTDGTERQV AKLMEEDIGA AMQFLQSKAL CMMPISLAMA IYDTHQPEAQ PVKPEPNTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398564.10.0PREDICTED: transcription factor UNE12 isoform X1
SwissprotO227685e-78UNE12_ARATH; Transcription factor UNE12
TrEMBLM0SQS00.0M0SQS0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P21070_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-64bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]